PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G118200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 139aa    MW: 16928.2 Da    PI: 8.9343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G118200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.83.6e-1831114182
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                         +fYn+YA++ GF+++k++ ++++ ++e+++r+f+Cs+eg+r+ +  +  +++r+++a tr+gC+a+  ++ ++ +g w+v++++
  Seita.6G118200.1.p  31 EFYNDYAYHKGFNISKDRVRYKTGTKEVIWRRFMCSCEGYRSVKYFErMDQKRQPHALTRCGCTARHDMEWSEsNGIWYVKHFV 114
                         6*****************************************998775789999************99999888******9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1631114IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEEEGYISLE KIKEYKSVVD QTFMREKDFY EFYNDYAYHK GFNISKDRVR YKTGTKEVIW  60
RRFMCSCEGY RSVKYFERMD QKRQPHALTR CGCTARHDME WSESNGIWYV KHFVDTTRFL  120
FYCNGKKTLQ YAQNRCNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700767.19e-67PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK3ZNJ84e-63K3ZNJ8_SETIT; Uncharacterized protein
STRINGSi028177m1e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-08FAR1 family protein